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Tools & Data


Software

Epistorm-Mix

Dataset containing contact patterns for all ages of the US population collected during the post-pandemic era from a statistically representative sample.

epydemix

Open-source Python package designed for flexible, modular, and data-driven epidemic modeling.

SummRt

R package and software to compare estimators of the time varying reproductive number; built in collaboration with the EpiForeSite center.

Reproductive number estimation R packages

Package to estimate the reproductive number at a spatially granular level with mobility data and also separately to incorporate reporting delays.

RtEval

R functions and vignettes to generate datasets and compare the most commonly used tools for reproductive number estimation.


Platforms

Flu Early Warning System

Our real-time early warning systems have been able to identify future surges in hospitalizations 2 to 6 weeks before they are reported by traditional disease surveillance systems.
Launch site

Flu Forecast

One-stop dashboard for the visualization and analysis of the model contributed by Epistorm to the CDC Flusight forecasting program.
Launch site

Epistorm Mobility Dashboard

The dashboard provides public health officials, epidemic modelers, and researchers with continuous access to high-resolution mobility data critical for disease transmission analysis and outbreak forecasting.
Launch site
This project was made possible by cooperative agreement CDC-RFA-FT-23-0069 from the CDC’s Center for Forecasting and Outbreak Analytics. Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the Centers for Disease Control and Prevention.
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